SRX200053
GSM1023627: LaminA ChIP, HGPS, p16, INPUT, rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Epidermis
Cell type
Forearm skin
NA
NA

Attributes by original data submitter

Sample

source_name
patient forearm skin biopsy, input
disease status
Hutchinson-Gilford progeria syndrome
tissue
forearm skin biopsy
cell type
fibroblasts
gender
male
cell line
HGADFN167
passage
16
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
17211997
Reads aligned (%)
98.7
Duplicates removed (%)
2.2
Number of peaks
627 (qval < 1E-05)

hg19

Number of total reads
17211997
Reads aligned (%)
97.8
Duplicates removed (%)
3.9
Number of peaks
977 (qval < 1E-05)

Base call quality data from DBCLS SRA