SRX200050
GSM1023624: LaminA ChIP, HGPS, p16, rep1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
LMNA

Cell type

Cell type Class
Epidermis
Cell type
Forearm skin
NA
NA

Attributes by original data submitter

Sample

source_name
patient forearm skin biopsy, lamin ChIP
disease status
Hutchinson-Gilford progeria syndrome
tissue
forearm skin biopsy
cell type
fibroblasts
gender
male
cell line
HGADFN167
passage
16
chip antibody
mouse anti-lamin A/C
antibody vendor
Millipore
antibody catalog number
MAB3211

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18072383
Reads aligned (%)
98.2
Duplicates removed (%)
3.4
Number of peaks
657 (qval < 1E-05)

hg19

Number of total reads
18072383
Reads aligned (%)
97.3
Duplicates removed (%)
4.9
Number of peaks
1026 (qval < 1E-05)

Base call quality data from DBCLS SRA