SRX200046
GSM1023620: LaminA ChIP, Father, p16, rep1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
LMNA

Cell type

Cell type Class
Epidermis
Cell type
Forearm skin
NA
NA

Attributes by original data submitter

Sample

source_name
normal forearm skin biopsy, lamin ChIP
disease status
normal
tissue
forearm skin biopsy
cell type
fibroblasts
gender
male
cell line
HGFDFN168
passage
16
chip antibody
mouse anti-lamin A/C
antibody vendor
Millipore
antibody catalog number
MAB3211

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18820795
Reads aligned (%)
72.0
Duplicates removed (%)
43.3
Number of peaks
508 (qval < 1E-05)

hg19

Number of total reads
18820795
Reads aligned (%)
71.5
Duplicates removed (%)
44.8
Number of peaks
667 (qval < 1E-05)

Base call quality data from DBCLS SRA