Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RARB

Cell type

Cell type Class
Breast
Cell type
MCF-12A
Primary Tissue
Breast
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
human mammary epithelial cells
cell line
MCF12A
antibody
RARb
treatment
ATRA

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
17204476
Reads aligned (%)
91.5
Duplicates removed (%)
6.2
Number of peaks
569 (qval < 1E-05)

hg38

Number of total reads
17204476
Reads aligned (%)
93.8
Duplicates removed (%)
4.9
Number of peaks
721 (qval < 1E-05)

Base call quality data from DBCLS SRA