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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Ctcf
wikigenes
PDBj
CellType: CD4 CD8 double positive cells
ATCC
MeSH
RIKEN BRC
SRX199992
GSM1023418: CTCF DP ChIP seq; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Ctcf
Cell type
Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA
Attributes by original data submitter
Sample
source_name
Rag1 -/- with TCRb transgene, thymocytes
strain
C57BL/6
genotype/variation
Rag1 -/- with TCRbeta transgene
age
4- to 8-wk-old
tissue
CD4+CD8+ (DP) thymocytes
chip antibody
Anti-CTCF Antibody
chip antibody vendor
Millipore
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
7349830
Reads aligned (%)
93.8
Duplicates removed (%)
13.7
Number of peaks
35239 (qval < 1E-05)
mm9
Number of total reads
7349830
Reads aligned (%)
93.6
Duplicates removed (%)
13.9
Number of peaks
35244 (qval < 1E-05)
Base call quality data from
DBCLS SRA