SRX199985
GSM1023420: CTCF pro-B; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Blood
Cell type
Pro-B cells
NA
NA

Attributes by original data submitter

Sample

source_name
Rag1 -/- pro-B cells
strain
C57BL/6
genotype/variation
Rag1 -/-
age
5- to 8-wk-old
tissue
pro-B cells
chip antibody
Anti-CTCF Antibody
chip antibody vendor
Millipore

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
10040506
Reads aligned (%)
90.8
Duplicates removed (%)
16.4
Number of peaks
31267 (qval < 1E-05)

mm9

Number of total reads
10040506
Reads aligned (%)
90.7
Duplicates removed (%)
16.6
Number of peaks
31246 (qval < 1E-05)

Base call quality data from DBCLS SRA