SRX199973
GSM1023416: CTCF DN ChIP seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double negative cells
NA
NA

Attributes by original data submitter

Sample

source_name
Rag1 -/- CD4-CD8- (DN) thymocytes
strain
C57BL/6
genotype/variation
Rag -/-
age
4- to 8-wk-old
tissue
CD4-CD8- (DN) thymocytes
chip antibody
Anti-CTCF Antibody
chip antibody vendor
Millipore

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
10329668
Reads aligned (%)
91.5
Duplicates removed (%)
44.5
Number of peaks
25976 (qval < 1E-05)

mm9

Number of total reads
10329668
Reads aligned (%)
91.3
Duplicates removed (%)
44.8
Number of peaks
26011 (qval < 1E-05)

Base call quality data from DBCLS SRA