Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Cardiovascular

Cell type

HCM

Tissue

heart

Lineage

mesoderm

Description

cardiac myocytes

Sample

source_name

HCM

biomaterial_provider

ScienCell

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

HCM

cell organism

human

cell description

cardiac myocytes

cell karyotype

normal

cell lineage

mesoderm

cell sex

U

antibody

CTCF

antibody antibodydescription

Rabbit polyclonal. Antibody Target: CTCF

antibody targetdescription

CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

antibody vendorname

Millipore

antibody vendorid

07-729

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000946

labexpid

DS18567

labversion

Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

replicate

2

Sequenced DNA Library

library_name

ERROR: cannot retrieve data from NCBI: too many requests

library_strategy

ERROR: cannot retrieve data from NCBI: too many requests

library_source

ERROR: cannot retrieve data from NCBI: too many requests

library_selection

ERROR: cannot retrieve data from NCBI: too many requests

library_construction_protocol

ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model

ERROR: cannot retrieve data from NCBI: too many requests

cycle_sequence

ERROR: cannot retrieve data from NCBI: too many requests

cycle_count

ERROR: cannot retrieve data from NCBI: too many requests

flow_sequence

ERROR: cannot retrieve data from NCBI: too many requests

flow_count

ERROR: cannot retrieve data from NCBI: too many requests

key_sequence

ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads

26399632

Reads aligned (%)

75.0

Duplicates removed (%)

12.1

Number of peaks

43816 (qval < 1E-05)

hg38

Number of total reads

26399632

Reads aligned (%)

75.5

Duplicates removed (%)

11.2

Number of peaks

43901 (qval < 1E-05)