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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CTCF
wikigenes
PDBj
CellType: HAc
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX199889
GSM1022661: UW ChipSeq HAc CTCFRep1
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CTCF
Cell type
Cell type Class
Neural
Cell type
HAc
Tissue
cerebellar
Lineage
ectoderm
Description
astrocytes-cerebellar
Attributes by original data submitter
Sample
source_name
HAc
biomaterial_provider
ScienCell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
HAc
cell organism
human
cell description
astrocytes-cerebellar
cell karyotype
normal
cell lineage
ectoderm
cell sex
U
antibody
CTCF
antibody antibodydescription
Rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname
Millipore
antibody vendorid
07-729
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH002165
labexpid
DS18313
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate
1
Sequenced DNA Library
library_name
GSM1022661: UW_ChipSeq_HAc_CTCFRep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
21950022
Reads aligned (%)
78.2
Duplicates removed (%)
23.1
Number of peaks
25298 (qval < 1E-05)
hg19
Number of total reads
21950022
Reads aligned (%)
77.6
Duplicates removed (%)
24.3
Number of peaks
25317 (qval < 1E-05)
Base call quality data from
DBCLS SRA