Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Epidermis

Cell type

HFF-Myc

Tissue

foreskin

Lineage

fibroblast

Description

foreskin fibroblast cells expressing canine cMyc

Sample

source_name

HFF-Myc

biomaterial_provider

Dr. Beverly Torok-Storb at Fred Hutchison Cancer Research Center

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

HFF-Myc

cell organism

human

cell description

foreskin fibroblast cells expressing canine cMyc

cell karyotype

normal

cell lineage

fibroblast

cell sex

M

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH001896

labexpid

DS18321

labversion

WindowDensity-bin20-win+/-75

replicate

1

Sequenced DNA Library

library_name

GSM1022654: UW_ChipSeq_HFF-Myc_InputRep1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

24717278

Reads aligned (%)

98.8

Duplicates removed (%)

2.2

Number of peaks

863 (qval < 1E-05)

hg19

Number of total reads

24717278

Reads aligned (%)

97.8

Duplicates removed (%)

3.7

Number of peaks

1052 (qval < 1E-05)