Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Blood

Cell type

GM12865

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed

Sample

source_name

GM12865

biomaterial_provider

Coriell

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

GM12865

cell organism

human

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1459, treatment: Epstein-Barr Virus transformed

cell lineage

mesoderm

cell sex

F

antibody

CTCF

antibody antibodydescription

Rabbit polyclonal. Antibody Target: CTCF

antibody targetdescription

CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

antibody vendorname

Millipore

antibody vendorid

07-729

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH000458

labexpid

DS13756

labversion

Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75

replicate

3

Sequenced DNA Library

library_name

GSM1022636: UW_ChipSeq_GM12865_CTCFRep3

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

18616806

Reads aligned (%)

97.1

Duplicates removed (%)

3.3

Number of peaks

29830 (qval < 1E-05)

hg19

Number of total reads

18616806

Reads aligned (%)

96.2

Duplicates removed (%)

4.4

Number of peaks

30767 (qval < 1E-05)