Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Lung
Cell type
AG04450
Tissue
lung
Lineage
endoderm
Description
fetal lung fibroblast

Attributes by original data submitter

Sample

source_name
AG04450
biomaterial_provider
Coriell
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
AG04450
cell organism
human
cell description
fetal lung fibroblast
cell karyotype
normal
cell lineage
endoderm
cell sex
M
antibody
CTCF
antibody antibodydescription
Rabbit polyclonal. Antibody Target: CTCF
antibody targetdescription
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendorname
Millipore
antibody vendorid
07-729
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH000930
labexpid
DS18603
labversion
Hotspot-v5.2,lmax-v1.0,WindowDensity-bin20-win+/-75
replicate
2

Sequenced DNA Library

library_name
GSM1022635: UW_ChipSeq_AG04450_CTCFRep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
24168618
Reads aligned (%)
77.4
Duplicates removed (%)
8.3
Number of peaks
36557 (qval < 1E-05)

hg38

Number of total reads
24168618
Reads aligned (%)
78.8
Duplicates removed (%)
7.2
Number of peaks
36644 (qval < 1E-05)

Base call quality data from DBCLS SRA