Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Pancreas

Cell type

PANC-1

Tissue

Pancreas/Duct

Disease

Epithelioid Carcinoma

Sample

source_name

PANC-1

biomaterial_provider

ATCC

lab

UW

lab description

Stamatoyannopoulous - University of Washington

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

PANC-1

cell organism

human

cell description

pancreatic carcinoma, (PMID: 1140870) PANC-1 was established from a pancreatic carcinoma, which was extracted via pancreatico-duodenectomy specimen from a 56-year-old Caucasian individual. Malignancy of this cell line was verified via in vitro and in vivo assays.

cell karyotype

cancer

cell lineage

endoderm

cell sex

M

antibody

Input

antibody description

Control signal which may be subtracted from experimental raw signal before peaks are called.

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

wgEncodeEH001900

labexpid

DS18331

labversion

WindowDensity-bin20-win+/-75

replicate

1

Sequenced DNA Library

library_name

GSM1022632: UW_ChipSeq_PANC-1_InputRep1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

27365308

Reads aligned (%)

99.3

Duplicates removed (%)

2.0

Number of peaks

750 (qval < 1E-05)

hg19

Number of total reads

27365308

Reads aligned (%)

98.3

Duplicates removed (%)

3.6

Number of peaks

970 (qval < 1E-05)