SRX199853
GSM1022625: UW ChipSeq CD20+ RO01778 InputRep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD20+ B cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD20+_RO01778
biomaterial_provider
Rajinder Kaul, UW
lab
UW
lab description
Stamatoyannopoulous - University of Washington
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
CD20+_RO01778
cell organism
human
cell description
B cells, caucasian, draw number 1, newly promoted to tier 2: not in 2011 analysis
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
wgEncodeEH002170
labexpid
DS18984
labversion
WindowDensity-bin20-win+/-75
replicate
1

Sequenced DNA Library

library_name
GSM1022625: UW_ChipSeq_CD20+_RO01778_InputRep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26510296
Reads aligned (%)
97.8
Duplicates removed (%)
4.9
Number of peaks
742 (qval < 1E-05)

hg19

Number of total reads
26510296
Reads aligned (%)
96.8
Duplicates removed (%)
6.3
Number of peaks
940 (qval < 1E-05)

Base call quality data from DBCLS SRA