Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYOG

Cell type

Cell type Class
Muscle
Cell type
Rhabdomyosarcoma
MeSH Description
A malignant solid tumor arising from mesenchymal tissues which normally differentiate to form striated muscle. It can occur in a wide variety of sites. It is divided into four distinct types: pleomorphic, predominantly in male adults; alveolar (RHABDOMYOSARCOMA, ALVEOLAR), mainly in adolescents and young adults; embryonal (RHABDOMYOSARCOMA, EMBRYONAL), predominantly in infants and children; and botryoidal, also in young children. It is one of the most frequently occurring soft tissue sarcomas and the most common in children under 15. (From Dorland, 27th ed; Holland et al., Cancer Medicine, 3d ed, p2186; DeVita Jr et al., Cancer: Principles & Practice of Oncology, 3d ed, pp1647-9)

Attributes by original data submitter

Sample

source_name
RMS cell line, mutant HRAS
antibody
Myogenin, Thermo (cat MA5-11486 mAb)
enrichment target
MYOG
target function
Transcription Factor
time
48 hr
treatment
Trametinib 100nM

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted from ChIP-seq samples prepared following the Active Motif ChIP-IT High Sensitivity kit protocol. DNase DNA purification was performed by column (MiniElute PCR purification kit, Qiagen). Standard Illumina barcodes were introduced during library preparation ChIP-seq and DNase-seq

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
30166726
Reads aligned (%)
23.2
Duplicates removed (%)
70.9
Number of peaks
10124 (qval < 1E-05)

hg38

Number of total reads
30166726
Reads aligned (%)
23.5
Duplicates removed (%)
70.6
Number of peaks
10162 (qval < 1E-05)

Base call quality data from DBCLS SRA