Antigen

Antigen Class

Histone

Antigen

H3K23ac

Cell type

Cell type Class

Breast

Cell type

MDA-MB-436

Primary Tissue

Breast

Site of Extraction

Effusion, Pleural

Tissue Diagnosis

Adenocarcinoma

Sample

source_name

MB436 cells, H3K23ac ChIP

cell line

MB436

cell type

Breast cancer cell line

treatment

Control

chip antibody

H3K23ac (Millipore, 07-355, lot 2137082)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. ChIP-seq libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

42677569

Reads aligned (%)

90.8

Duplicates removed (%)

3.0

Number of peaks

6838 (qval < 1E-05)

hg19

Number of total reads

42677569

Reads aligned (%)

90.1

Duplicates removed (%)

3.9

Number of peaks

6479 (qval < 1E-05)