Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
ZR-75-1
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
ZR751 cells, input
cell line
ZR751
cell type
Breast cancer cell line
treatment
Control
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. ChIP-seq libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
31273637
Reads aligned (%)
82.5
Duplicates removed (%)
2.2
Number of peaks
274 (qval < 1E-05)

hg19

Number of total reads
31273637
Reads aligned (%)
81.8
Duplicates removed (%)
2.9
Number of peaks
651 (qval < 1E-05)

Base call quality data from DBCLS SRA