Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
76NF2V
NA
NA

Attributes by original data submitter

Sample

source_name
76NF2V cells, input
cell line
76NF2V
cell type
Breast cancer cell line
treatment
Control
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. ChIP-seq libraries were prepared for sequencing using standard Illumina protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
48126201
Reads aligned (%)
94.2
Duplicates removed (%)
2.1
Number of peaks
1097 (qval < 1E-05)

hg19

Number of total reads
48126201
Reads aligned (%)
93.3
Duplicates removed (%)
3.5
Number of peaks
1288 (qval < 1E-05)

Base call quality data from DBCLS SRA