Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Neutrophils
MeSH Description
Immature neutrophils.

Attributes by original data submitter

Sample

source_name
Sorted neutrophils
cell type
neutrophil
passages
ex vivo non-cultured
strain
WT (C57BL6)
chip antibody
normal rabbit IgG _200 µg/0.5 ml (Santa Cruz sc-2027)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. libraries were prepared using the KAPA Hyper Prep Kit

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
38898227
Reads aligned (%)
94.8
Duplicates removed (%)
43.9
Number of peaks
3670 (qval < 1E-05)

mm9

Number of total reads
38898227
Reads aligned (%)
94.6
Duplicates removed (%)
43.9
Number of peaks
3684 (qval < 1E-05)

Base call quality data from DBCLS SRA