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BigWig
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Peak-call (q < 1E-10)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
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For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K4me1
wikigenes
PDBj
CellType: Neutrophils
ATCC
MeSH
RIKEN BRC
SRX1993713
GSM2257331: KO H3K4me1 ChIPSeq; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K4me1
Cell type
Cell type Class
Blood
Cell type
Neutrophils
MeSH Description
Immature neutrophils.
Attributes by original data submitter
Sample
source_name
Sorted neutrophils
cell type
neutrophil
passages
ex vivo non-cultured
strain
Morrbid deficient (Background - C57BL6)
chip antibody
Rabbit polyclonal to Histone H3 (mono methyl K4) - ChIP Grade (Abcam ab8895)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. libraries were prepared using the KAPA Hyper Prep Kit
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
34792527
Reads aligned (%)
97.9
Duplicates removed (%)
10.6
Number of peaks
28027 (qval < 1E-05)
mm9
Number of total reads
34792527
Reads aligned (%)
97.8
Duplicates removed (%)
10.6
Number of peaks
28114 (qval < 1E-05)
Base call quality data from
DBCLS SRA