SRX1986459
GSM2254437: GFP 1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Blood
Cell type
CD34 Hematopoietic stem cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD34+ hematopoietic stem cells
source
peripheral blood mobilized stem cells
passages
primary stem cells cultured for 14 days
antibody
anti-FLAG M2 (Sigma-Aldrich, Catalog no. F3165)
transduction
GFP lentivirus

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Diagenode ChIP-seq kit University of California, Davis Genomics Core

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
18620129
Reads aligned (%)
94.2
Duplicates removed (%)
17.9
Number of peaks
1076 (qval < 1E-05)

hg19

Number of total reads
18620129
Reads aligned (%)
92.6
Duplicates removed (%)
20.2
Number of peaks
1155 (qval < 1E-05)

Base call quality data from DBCLS SRA