ChIP-Atlas: SRX198038

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: RNA polymerase
Antigen: RNA polymerase II

Cell type

Cell type Class: Blood
Cell type: CD4+ T cells
NA: NA

Attributes by original data submitter

Sample

source_name: CD4+ T cells
cell type: CD4+ T cells
chip antibody: PolIISer2 [Abcam, Cat no. ab5095, Lot no. 782031]
treatment: JQ1 treated

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 90362836
Reads aligned (%): 96.0
Duplicates removed (%): 30.1
Number of peaks: 9107 (qval < 1E-05)

hg19

Number of total reads: 90362836
Reads aligned (%): 95.1
Duplicates removed (%): 32.1
Number of peaks: 8894 (qval < 1E-05)

Base call quality data from DBCLS SRA