SRX198035
GSM1022945: PolII4H8 untreated Tcell ChIPseq pooled5donor; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cells
cell type
CD4+ T cells
chip antibody
PolII4H8 [Abcam, Cat no. ab5408, Lot no. 722997]
treatment
untreated

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
143114260
Reads aligned (%)
95.0
Duplicates removed (%)
52.4
Number of peaks
16187 (qval < 1E-05)

hg19

Number of total reads
143114260
Reads aligned (%)
94.1
Duplicates removed (%)
54.6
Number of peaks
15711 (qval < 1E-05)

Base call quality data from DBCLS SRA