SRX198033
GSM1022943: BRD4 untreated Tcell ChIPseq pooled5donor; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD4+ T cells
cell type
CD4+ T cells
chip antibody
BRD4 [Abcam, Cat no. ab46199, Lot no. 613288]
treatment
untreated

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
182750685
Reads aligned (%)
93.8
Duplicates removed (%)
53.3
Number of peaks
12321 (qval < 1E-05)

hg19

Number of total reads
182750685
Reads aligned (%)
92.8
Duplicates removed (%)
55.6
Number of peaks
11601 (qval < 1E-05)

Base call quality data from DBCLS SRA