SRX1980024
GSM2253718: Input wtEpiSCs 15min fix3; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
EpiSC
NA
NA

Attributes by original data submitter

Sample

source_name
Input wtEpiSCs 15min fix3
tissue
EpiSCs
antibody
none
treatment
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslinking 15mins RT, lysis, sonication following standard procedures. Illumina Truseq DNA library protocol

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
71761218
Reads aligned (%)
95.9
Duplicates removed (%)
16.9
Number of peaks
431 (qval < 1E-05)

mm9

Number of total reads
71761218
Reads aligned (%)
95.6
Duplicates removed (%)
16.8
Number of peaks
529 (qval < 1E-05)

Base call quality data from DBCLS SRA