SRX1980021
GSM2253715: Input wtEpiSCs 10min fix1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
EpiSC
NA
NA

Attributes by original data submitter

Sample

source_name
Input wtEpiSCs 10min fix1
tissue
EpiSCs
antibody
none
treatment
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslinking 10mins RT, lysis, sonication following standard procedures. Illumina Truseq DNA library protocol

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
63324098
Reads aligned (%)
96.7
Duplicates removed (%)
16.3
Number of peaks
382 (qval < 1E-05)

mm9

Number of total reads
63324098
Reads aligned (%)
96.5
Duplicates removed (%)
16.2
Number of peaks
468 (qval < 1E-05)

Base call quality data from DBCLS SRA