SRX1980020
GSM2253714: Input wtE9.5Tailbud 10min fix1; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Tail bud
NA
NA

Attributes by original data submitter

Sample

source_name
Input wtE9.5Tailbud 10min fix1
tissue
E9.5 embryo tailbud
antibody
none
treatment
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslinking 10mins RT, lysis, sonication according to Amin and Bobola (2014). Illumina Truseq DNA library protocol

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
68844804
Reads aligned (%)
95.3
Duplicates removed (%)
16.4
Number of peaks
425 (qval < 1E-05)

mm9

Number of total reads
68844804
Reads aligned (%)
95.0
Duplicates removed (%)
16.3
Number of peaks
521 (qval < 1E-05)

Base call quality data from DBCLS SRA