Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Anterior tissues
NA
NA

Attributes by original data submitter

Sample

source_name
Input wtE9.5Anterior 10min fix1
tissue
E9.5 embryo anterior
antibody
none
treatment
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Crosslinking 10mins RT, lysis, sonication according to Amin and Bobola (2014). Illumina Truseq DNA library protocol

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
98563104
Reads aligned (%)
95.6
Duplicates removed (%)
18.3
Number of peaks
569 (qval < 1E-05)

mm9

Number of total reads
98563104
Reads aligned (%)
95.3
Duplicates removed (%)
18.2
Number of peaks
678 (qval < 1E-05)

Base call quality data from DBCLS SRA