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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Tbp
wikigenes
PDBj
CellType: 1-2h embryos
ATCC
MeSH
RIKEN BRC
SRX197584
GSM1022912: ChIP-seq TBP in pre-MBT embryos (replicate 2); Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Tbp
Cell type
Cell type Class
Embryo
Cell type
1-2h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
Staged embryos
Stage
pre-MBT 01to02h AEL
genotype
Oregon-R
ChIP
TBP
antibody vendor/catalog
rabbit poly-antibody against dTBP
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
15350273
Reads aligned (%)
51.8
Duplicates removed (%)
63.5
Number of peaks
2486 (qval < 1E-05)
dm3
Number of total reads
15350273
Reads aligned (%)
52.5
Duplicates removed (%)
58.6
Number of peaks
1854 (qval < 1E-05)
Base call quality data from
DBCLS SRA