Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Tbp

Cell type

Cell type Class
Embryo
Cell type
1-2h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
Staged embryos
Stage
pre-MBT 01to02h AEL
genotype
Oregon-R
ChIP
TBP
antibody vendor/catalog
rabbit poly-antibody against dTBP

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

dm3

Number of total reads
21764655
Reads aligned (%)
27.9
Duplicates removed (%)
8.8
Number of peaks
1486 (qval < 1E-05)

dm6

Number of total reads
21764655
Reads aligned (%)
26.8
Duplicates removed (%)
10.7
Number of peaks
2262 (qval < 1E-05)

Base call quality data from DBCLS SRA