SRX197578
GSM1022906: ChIP-seq H3K4me3 in pre-MBT embryos (replicate 2); Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Embryo
Cell type
1-2h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
Staged embryos
Stage
pre-MBT 01to02h AEL
genotype
Oregon-R
ChIP
H3K4me3
antibody vendor/catalog
Cell Signaling Technology 9751S

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
24521366
Reads aligned (%)
55.5
Duplicates removed (%)
59.2
Number of peaks
2397 (qval < 1E-05)

dm3

Number of total reads
24521366
Reads aligned (%)
56.2
Duplicates removed (%)
56.7
Number of peaks
1767 (qval < 1E-05)

Base call quality data from DBCLS SRA