Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Tbp

Cell type

Cell type Class
Embryo
Cell type
2-4h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
Staged embryos
Stage
post-MBT 02to04h AEL
genotype
Oregon-R
ChIP
TBP
antibody vendor/catalog
rabbit poly-antibody against dTBP

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

dm3

Number of total reads
9715919
Reads aligned (%)
68.4
Duplicates removed (%)
11.7
Number of peaks
4982 (qval < 1E-05)

dm6

Number of total reads
9715919
Reads aligned (%)
66.1
Duplicates removed (%)
14.4
Number of peaks
5329 (qval < 1E-05)

Base call quality data from DBCLS SRA