Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Tbp

Cell type

Cell type Class
Embryo
Cell type
2-3h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
Staged embryos
Stage
MBT 02to03h AEL
genotype
Oregon-R
ChIP
TBP
antibody vendor/catalog
rabbit poly-antibody against dTBP

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

dm3

Number of total reads
20936152
Reads aligned (%)
51.5
Duplicates removed (%)
41.7
Number of peaks
3639 (qval < 1E-05)

dm6

Number of total reads
20936152
Reads aligned (%)
47.7
Duplicates removed (%)
45.6
Number of peaks
4125 (qval < 1E-05)

Base call quality data from DBCLS SRA