Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Tbp

Cell type

Cell type Class
Embryo
Cell type
2-3h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
Staged embryos
Stage
MBT 02to03h AEL
genotype
Oregon-R
ChIP
TBP
antibody vendor/catalog
rabbit poly-antibody against dTBP

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

dm3

Number of total reads
20339444
Reads aligned (%)
47.9
Duplicates removed (%)
30.2
Number of peaks
2385 (qval < 1E-05)

dm6

Number of total reads
20339444
Reads aligned (%)
44.8
Duplicates removed (%)
34.2
Number of peaks
2979 (qval < 1E-05)

Base call quality data from DBCLS SRA