SRX197570
GSM1022898: ChIP-seq TBP in MBT embryos (replicate 1); Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Tbp

Cell type

Cell type Class
Embryo
Cell type
2-3h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
Staged embryos
Stage
MBT 02to03h AEL
genotype
Oregon-R
ChIP
TBP
antibody vendor/catalog
rabbit poly-antibody against dTBP

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

dm3

Number of total reads
20339444
Reads aligned (%)
68.6
Duplicates removed (%)
30.2
Number of peaks
2385 (qval < 1E-05)

dm6

Number of total reads
20339444
Reads aligned (%)
68.1
Duplicates removed (%)
34.2
Number of peaks
2979 (qval < 1E-05)

Base call quality data from DBCLS SRA