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Install and launch IGV before selecting data to visualize
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For dm6
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For dm3
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For dm6
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For dm3
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: RNA polymerase II
wikigenes
PDBj
CellType: 2-3h embryos
ATCC
MeSH
RIKEN BRC
SRX197567
GSM1022895: ChIP-seq Pol II in MBT embryos (replicate 1); Drosophila melanogaster; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
RNA polymerase
Antigen
RNA polymerase II
Cell type
Cell type Class
Embryo
Cell type
2-3h embryos
NA
NA
Attributes by original data submitter
Sample
source_name
Staged embryos
Stage
MBT 02to03h AEL
genotype
Oregon-R
ChIP
Pol II
antibody vendor/catalog
Covance 8WG16 (MMS-126R)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
dm6
Number of total reads
37678041
Reads aligned (%)
81.7
Duplicates removed (%)
43.4
Number of peaks
8442 (qval < 1E-05)
dm3
Number of total reads
37678041
Reads aligned (%)
82.2
Duplicates removed (%)
40.2
Number of peaks
8712 (qval < 1E-05)
Base call quality data from
DBCLS SRA