Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Embryo
Cell type
2-3h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
Staged embryos
Stage
MBT 02to03h AEL
genotype
Oregon-R
ChIP
H3K4me3
antibody vendor/catalog
Cell Signaling Technology 9751S

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

dm6

Number of total reads
15982455
Reads aligned (%)
54.2
Duplicates removed (%)
62.9
Number of peaks
5849 (qval < 1E-05)

dm3

Number of total reads
15982455
Reads aligned (%)
54.6
Duplicates removed (%)
62.7
Number of peaks
6067 (qval < 1E-05)

Base call quality data from DBCLS SRA