SRX1962095
GSM2243117: RH18 input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Muscle
Cell type
RH-18
Primary Tissue
Skelatal Muscle
Tissue Diagnosis
Rhabdomyosarcoma

Attributes by original data submitter

Sample

source_name
RH18 Fusion Negative Rhabdomyosarcoma cell line
antibody
NA
enrichment target
input
target function
control

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted from ChIP-seq samples prepared following the Active Motif ChIP-IT High Sensitivity kit protocol. Standard Illumina barcodes were introduced during library preparation

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24615161
Reads aligned (%)
93.3
Duplicates removed (%)
10.1
Number of peaks
3525 (qval < 1E-05)

hg19

Number of total reads
24615161
Reads aligned (%)
90.3
Duplicates removed (%)
16.2
Number of peaks
3323 (qval < 1E-05)

Base call quality data from DBCLS SRA