SRX196108
GSM1020364: adipocyte CEBPa ChIP-seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CEBPA

Cell type

Cell type Class
Adipocyte
Cell type
SGBS
NA
NA

Attributes by original data submitter

Sample

source_name
SGBS cell line undergoing differentiation for 10 days
cell type
adipocyte
chip antibody
CEBPa (sc-61, Santa Cruz Biotechnologies)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
38167399
Reads aligned (%)
94.1
Duplicates removed (%)
30.2
Number of peaks
4388 (qval < 1E-05)

hg19

Number of total reads
38167399
Reads aligned (%)
93.3
Duplicates removed (%)
32.1
Number of peaks
4410 (qval < 1E-05)

Base call quality data from DBCLS SRA