Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PPARG

Cell type

Cell type Class
Adipocyte
Cell type
SGBS
NA
NA

Attributes by original data submitter

Sample

source_name
SGBS cell line undergoing differentiation for 10 days
cell type
adipocyte
chip antibody
PPARg (mixture of 0.5 ul per IP of sc-7196x, Santa Cruz Biotechnologies, and 5 ul per IP of 101700, Cayman)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
24258808
Reads aligned (%)
55.3
Duplicates removed (%)
38.0
Number of peaks
3083 (qval < 1E-05)

hg38

Number of total reads
24258808
Reads aligned (%)
57.2
Duplicates removed (%)
36.4
Number of peaks
3002 (qval < 1E-05)

Base call quality data from DBCLS SRA