Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Adipocyte
Cell type
SGBS
NA
NA

Attributes by original data submitter

Sample

source_name
SGBS cell line undergoing differentiation for 10 days
cell type
adipocyte
chip antibody
H3K4me3 (17-614, Millipore)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
20885851
Reads aligned (%)
97.6
Duplicates removed (%)
10.0
Number of peaks
18026 (qval < 1E-05)

hg19

Number of total reads
20885851
Reads aligned (%)
96.7
Duplicates removed (%)
12.2
Number of peaks
18019 (qval < 1E-05)

Base call quality data from DBCLS SRA