Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Adipocyte
Cell type
SGBS
NA
NA

Attributes by original data submitter

Sample

source_name
Confluent preadipocyte SGBS cell line
cell type
preadipocyte
chip antibody
H3K4me3 (17-614, Millipore)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
21363923
Reads aligned (%)
98.2
Duplicates removed (%)
9.7
Number of peaks
23174 (qval < 1E-05)

hg19

Number of total reads
21363923
Reads aligned (%)
97.4
Duplicates removed (%)
11.4
Number of peaks
23213 (qval < 1E-05)

Base call quality data from DBCLS SRA