Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Hindlimb
MeSH Description
Either of two extremities of four-footed non-primate land animals. It usually consists of a FEMUR; TIBIA; and FIBULA; tarsals; METATARSALS; and TOES. (From Storer et al., General Zoology, 6th ed, p73)

Attributes by original data submitter

Sample

source_name
embryonic hindlimb
strain
ICR
tissue
embryonic hindlimb bud
age
E11.5
genotype
wild type
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
48884860
Reads aligned (%)
84.8
Duplicates removed (%)
8.6
Number of peaks
945 (qval < 1E-05)

mm9

Number of total reads
48884860
Reads aligned (%)
84.6
Duplicates removed (%)
8.5
Number of peaks
1183 (qval < 1E-05)

Base call quality data from DBCLS SRA