SRX195320
GSM1019774: IgG ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
IgG_ChIPSeq
cell line
E14Tg2A
cell type
embryonic stem cells
genotype/variation
wild type
antibody
IgG; Abcam, #46540

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
31218866
Reads aligned (%)
81.1
Duplicates removed (%)
25.0
Number of peaks
477 (qval < 1E-05)

mm9

Number of total reads
31218866
Reads aligned (%)
80.9
Duplicates removed (%)
25.1
Number of peaks
582 (qval < 1E-05)

Base call quality data from DBCLS SRA