SRX194581
GSM1019137: TLE3 REP1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TLE3

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
TLE3_ChIP
cell line
MCF7
library id
JC945
antibody
TLE3; ab94972(abcam)-Lot(GR54354-1)
treatment
MCF7 cells in Complete DMEM media

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27054997
Reads aligned (%)
96.3
Duplicates removed (%)
15.6
Number of peaks
4455 (qval < 1E-05)

hg19

Number of total reads
27054997
Reads aligned (%)
95.9
Duplicates removed (%)
16.1
Number of peaks
4627 (qval < 1E-05)

Base call quality data from DBCLS SRA