Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RXRA

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
RXRA_ChIP
cell line
MCF7
library id
JC907
antibody
RXRA; sc-553 (santa cruz)-Lot(E0411)
treatment
MCF7 cells in Complete DMEM media

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
34975568
Reads aligned (%)
71.8
Duplicates removed (%)
12.1
Number of peaks
1776 (qval < 1E-05)

hg38

Number of total reads
34975568
Reads aligned (%)
76.4
Duplicates removed (%)
8.3
Number of peaks
1788 (qval < 1E-05)

Base call quality data from DBCLS SRA