SRX194579
GSM1019135: IgG REP1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
IgG_ChIP
cell line
MCF7
library id
JC888
antibody
IgG; sc-2027 (santa cruz)-Lot(c2712)
treatment
MCF7 cells in Complete DMEM media

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
19721666
Reads aligned (%)
92.0
Duplicates removed (%)
15.4
Number of peaks
688 (qval < 1E-05)

hg19

Number of total reads
19721666
Reads aligned (%)
90.6
Duplicates removed (%)
17.9
Number of peaks
950 (qval < 1E-05)

Base call quality data from DBCLS SRA