SRX194576
GSM1019132: GREB1 XENO REP1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GREB1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
GREB1_XENO_ChIP
cell line
MCF7
library id
JC629
antibody
GREB1; HPA024616 (sigma)Lot-(A57971)
treatment
MCF7 xenograft tumour in mouse

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
31077248
Reads aligned (%)
88.3
Duplicates removed (%)
26.6
Number of peaks
1946 (qval < 1E-05)

hg19

Number of total reads
31077248
Reads aligned (%)
87.6
Duplicates removed (%)
28.1
Number of peaks
2074 (qval < 1E-05)

Base call quality data from DBCLS SRA