SRX194574
GSM1019130: GREB1 ICI REP2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GREB1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
GREB1_ICI_ChIP
cell line
MCF7
library id
JC466
antibody
GREB1; ab72999 (abcam) Lot-(ab12563)
treatment
MCF7 cells in Complete DMEM media and 4 hours of 100nM ICI 182780(rep2)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27448674
Reads aligned (%)
98.5
Duplicates removed (%)
32.2
Number of peaks
1562 (qval < 1E-05)

hg19

Number of total reads
27448674
Reads aligned (%)
97.8
Duplicates removed (%)
33.6
Number of peaks
1671 (qval < 1E-05)

Base call quality data from DBCLS SRA