Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
GREB1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
GREB1_ChIP
cell line
MCF7
library id
JC465
antibody
GREB1; ab72999 (abcam) Lot-(ab12563)
treatment
MCF7 cells in Complete DMEM media (rep2)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
26735818
Reads aligned (%)
42.5
Duplicates removed (%)
56.4
Number of peaks
3732 (qval < 1E-05)

hg38

Number of total reads
26735818
Reads aligned (%)
44.3
Duplicates removed (%)
54.9
Number of peaks
3620 (qval < 1E-05)

Base call quality data from DBCLS SRA