SRX194572
GSM1019128: ER REP2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
ER_ChIP
cell line
MCF7
library id
JC430
antibody
ER; sc-534 (santa cruz) Lot-(HC-20)
treatment
MCF7 cells in Complete DMEM media

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27404636
Reads aligned (%)
99.1
Duplicates removed (%)
6.1
Number of peaks
34645 (qval < 1E-05)

hg19

Number of total reads
27404636
Reads aligned (%)
98.5
Duplicates removed (%)
7.1
Number of peaks
34691 (qval < 1E-05)

Base call quality data from DBCLS SRA